ncRNA database in Bioinformatics Research Group, CAS

		Bioinformatics Research Group, CAS

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nucleotide AB009049

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Revised: Jun 28, 2007.

detailed information on nucleotide AB009049

Go to: General Description Reference Related ncRNA

General Information

Accession in NCBI: AB009049

version: 1

date: 14-FEB-2004

NCBI URL: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=AB009049

Description

division: PLN (plant, fungal, and algal)

type: DNA

length: 87685

definition: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCD7.

keywords:

organism: Arabidopsis thaliana (thale cress)

taxonomic group: thaliana Arabidopsis Brassicaceae Brassicales eurosids II rosids core eudicots eudicotyledons Magnoliophyta Spermatophyta Tracheophyta Embryophyta Streptophyta Viridiplantae Eukaryota

comment: Comment: Address for correspondence: kaos@kazusa.or.jp For the latest information on annotation of this clone, please see http://www.kazusa.or.jp/kaos/cgi-bin/agd_graph.cgi?c=MCD7 Genes with similarity to proteins in the databases are described in 'product' or 'note' qualifiers. Genes that have no significant protein similarity are described as 'unknown protein'. The software programs used to predict genes include: Grail (Informatics Group, Oak Ridge National Laboratory, http://compbio.ornl.gov/Grail-1.3/), GENSCAN (Chris Burge, MIT, http://CCR-081.mit.edu/GENSCAN.html), NetGene2 (S.M. Hebsgaard, et al., CBS, Technical University of Denmark, http://www.cbs.dtu.dk/services/NetGene2/) and SplicePredictor (Volker Brendel, Stanford University, http://gremlin1.zool.iastate.edu/cgi-bin/sp.cgi). Genes encoding tRNAs are predicted by tRNAscan-SE (Sean Eddy, Washington University School of Medicine, St. Louis, http://genome.wustl.edu/eddy/tRNAscan-SE/). This sequence may not be the entire insert of this clone. It may be shorter because we remove overlaps between neighboring submissions. The 5' clone is MXK23 and the 3' clone is MKN22.

Reference

refid: r4
authors: Sato,S., Kaneko,T., Kotani,H., Nakamura,Y., Asamizu,E., Miyajima,N. and Tabata,S.
title: Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones
journal: DNA Res. 5 (1), 41-54 (1998)
medline: 98290546
pubmed: 9628582

Related ncRNA

ncRNA in this accession: n5