ncRNA database in Bioinformatics Research Group, CAS

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nucleotide AB010698

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Revised: Jun 28, 2007.

detailed information on nucleotide AB010698

Go to: General Description Reference Related ncRNA

General Information

Accession in NCBI: AB010698

version: 1

date: 14-FEB-2004

NCBI URL: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=AB010698

Description

division: PLN (plant, fungal, and algal)

type: DNA

length: 87434

definition: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12.

keywords:

organism: Arabidopsis thaliana (thale cress)

taxonomic group: thaliana Arabidopsis Brassicaceae Brassicales eurosids II rosids core eudicots eudicotyledons Magnoliophyta Spermatophyta Tracheophyta Embryophyta Streptophyta Viridiplantae Eukaryota

comment: Comment: Address for correspondence: kaos@kazusa.or.jp For the latest information on annotation of this clone, please see http://www.kazusa.or.jp/kaos/cgi-bin/agd_graph.cgi?c=MPL12 Genes with similarity to proteins in the databases are described in 'product' or 'note' qualifiers. Genes that have no significant protein similarity are described as 'unknown protein'. The software programs used to predict genes include: Grail (Informatics Group, Oak Ridge National Laboratory, http://compbio.ornl.gov/Grail-1.3/), GENSCAN (Chris Burge, MIT, http://CCR-081.mit.edu/GENSCAN.html), NetGene2 (S.M. Hebsgaard, et al., CBS, Technical University of Denmark, http://www.cbs.dtu.dk/services/NetGene2/) and SplicePredictor (Volker Brendel, Stanford University, http://gremlin1.zool.iastate.edu/cgi-bin/sp.cgi). Genes encoding tRNAs are predicted by tRNAscan-SE (Sean Eddy, Washington University School of Medicine, St. Louis, http://genome.wustl.edu/eddy/tRNAscan-SE/). This sequence may not be the entire insert of this clone. It may be shorter because we remove overlaps between neighboring submissions. The 5' clone is MDE13 and the 3' clone is K11I1.

Reference

refid: r5
authors: Kaneko,T., Kotani,H., Nakamura,Y., Sato,S., Asamizu,E., Miyajima,N. and Tabata,S.
title: Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones
journal: DNA Res. 5 (2), 131-145 (1998)
medline: 98344145
pubmed: 9679202

Related ncRNA

ncRNA in this accession: n7