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| organism | ncid | uniqid | accession | class | pfclass | name |
| chloroplast Cyanidioschyzon merolae | n1 | u1 | AB002583 | tmRNA | RNA_translation_surveillance | ssrA |
| chloroplast Cyanidioschyzon merolae | n2 | u2 | AB002583 | RNase P RNA | RNA_processing_cleavage | rnpB |
| Synechococcus sp | n3 | u3 | AB003477 | tmRNA | RNA_translation_surveillance | 10Sa |
| Arabidopsis thaliana (thale cress) | n4 | u4 | AB007644 | snoRNA | RNA_processing_cleavage | U3 |
| Arabidopsis thaliana (thale cress) | n5 | u5 | AB009049 | snoRNA | RNA_modification_methylation | U24 |
| Arabidopsis thaliana (thale cress) | n6 | u6 | AB009051 | snRNA | RNA_processing_splicing | U6 |
| Arabidopsis thaliana (thale cress) | n7 | u7 | AB010698 | snRNA | RNA_processing_splicing | U6 |
| Mus musculus (house mouse) | n8 | u8 | AB010885 | BORG RNA | Miscfunction_mRNAlike | BORG RNA |
| Arabidopsis thaliana (thale cress) | n9 | u9 | AB013387 | snoRNA | RNA_processing_cleavage | U3 |
| Arabidopsis thaliana (thale cress) | n10 | u10 | AB013390 | snRNA | RNA_processing_splicing | U2 |
| Arabidopsis thaliana (thale cress) | n11 | u11 | AB013396 | snRNA | RNA_processing_splicing | U2 |
| Rattus norvegicus (Norway rat) | n12 | u12 | AB014877 | Bsr RNA | Miscfunction_snm | Bsr RNA |
| Rattus norvegicus (Norway rat) | n13 | u13 | AB014878 | Bsr RNA | Miscfunction_snm | Bsr RNA |
| Rattus norvegicus (Norway rat) | n14 | u14 | AB014879 | Bsr RNA | Miscfunction_snm | Bsr RNA |
| Rattus norvegicus (Norway rat) | n15 | u15 | AB014880 | Bsr RNA | Miscfunction_snm | Bsr RNA |
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