Track Data Hubs
 

Track data hubs are collections of tracks from outside of UCSC that can be imported into the Genome Browser. To import a public hub check the box in the list below. After import the hub will show up as a group of tracks with its own blue bar and label underneath the main browser graphic, and in the configure page. For more information, see the User's Guide.

NOTE: Because Track Hubs are created and maintained by external sources, UCSC is not responsible for their content.

Display Hub Name Description Assemblies URL
rfam12_ncRNA ERROR: TCP non-blocking connect() to ftp.ebi.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Can't get data socket for ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.0/genome_browser_hub/genomes.txt Debughg38,mm10,ce10,galGal4,ci2,danRer7,dm6,sacCer3 ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.0/genome_browser_hub/hub.txt
UniProt Features ERROR: ftp server response timed out > 1000000 microsec Couldn't open ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_hub/genomes.txt Debughg38 ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_hub/hub.txt
Principal Splice Isoforms APPRIS Selects a single CDS variant for each gene as the 'PRINCIPAL' isoform based on the range of protein features. hg38,hg19,mm10,danRer10,rn6,susScr3,panTro4,dm6,ce10 http://apprisws.bioinfo.cnio.es/trackHub/hub.txt
Peptide evidences CNIO Peptides detected from a re-analysis of multiple experiments and databases hg38,hg19 http://apprisws.bioinfo.cnio.es/trackHubPROTEO/hub.txt
CESAR Gene Mappings ERROR: Couldn't open http://bds.mpi-cbg.de/hillerlab/CESAR/trackHub/hub.txt DebugbosTau7,ailMel1,allMis1,anoCar2,calJac3,canFam3,cavPor3,cerSim1,chrPic1,criGri1,danRer7,dasNov3,echTel2,equCab2,eriEur2,felCat5,fr3,gadMor1,galGal4,gasAcu1,geoFor1,gorGor3,hetGla2,latCha1,loxAfr3,macEug2,macFas5,melGal1,melUnd1,mm10,monDom5,musFur1,myoLuc2,nomLeu3,ochPri3,oreNil2,ornAna1,oryCun2,oryLat2,otoGar3,oviAri3,panTro4,papHam1,petMar2,ponAbe2,pteVam1,rheMac3,rn5,saiBol1,sarHar1,sorAra2,speTri2,susScr3,taeGut2,tetNig2,triMan1,turTru2,vicPac2,xenTro7,hub.amaVit1,hub.anaPla1,hub.apaSpi1,hub.araMac1,hub.astMex1,hub.camFer1,hub.capHir1,hub.cheMyd1,hub.chiLan1,hub.chlSab1,hub.chrAsi1,hub.colLiv1,hub.conCri1,hub.eleEdw1,hub.eptFus1,hub.falChe1,hub.falPer1,hub.ficAlb2,hub.hapBur1,hub.jacJac1,hub.lepOcu1,hub.lepWed1,hub.mayZeb1,hub.mesAur1,hub.micOch1,hub.myoDav1,hub.neoBri1,hub.octDeg1,hub.odoRosDiv1,hub.orcOrc1,hub.oryAfe1,hub.panHod1,hub.pelSin1,hub.pseHum1,hub.pteAle1,hub.punNye1,hub.takFla1,hub.tupChi1,hub.xipMac1,hub.zonAlb1 http://bds.mpi-cbg.de/hillerlab/CESAR/trackHub/hub.txt
EPD Viewer Hub ERROR: Couldn't open http://epd.vital-it.ch/ucsc/epdHubCustomSpecies/epdHubCustomSpecies.txt Debugamel5,araTha1,zm3,spo2 http://epd.vital-it.ch/ucsc/epdHubCustomSpecies/epdHubCustomSpecies.txt
McGill EMC (CEEHRC) ERROR: Couldn't open http://epigenomesportal.ca/hub/hub.txt Debughg19 http://epigenomesportal.ca/hub/hub.txt
FANTOM5 ERROR: Couldn't open http://fantom.gsc.riken.jp/5/datahub/hub.txt Debughg38,mm10,hg19,mm9,canFam3,rn6,rheMac8 http://fantom.gsc.riken.jp/5/datahub/hub.txt
FANTOM5 CAGE RECLU DATA ERROR: Couldn't open http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/hub.txt Debughg19,hg18 http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/hub.txt
Blueprint Hub Blueprint Epigenomics Data Hub hg38 http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/current_release/homo_sapiens/hub/hub.txt
ENCODE Analysis Hub ENCODE Integrative Analysis Data Hub hg19 http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt
Translation Initiation Sites (TIS) Translation Initiation Sites (TIS) track hg19 http://gengastro.med.tu-dresden.de/suppl/footprint/Hub/tisHub.txt
Ultraconserved Elements ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt Debughg19 http://genome-test.cse.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt
Plants ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/Plants/hub.txt DebugaraTha1,braRap1,ricCom1 http://genome-test.cse.ucsc.edu/~hiram/hubs/Plants/hub.txt
EcoliCompHub ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenome/hub.txt DebugEscherichiaColi042Uid161985,EscherichiaColi536Uid58531,EscherichiaColi55989Uid59383,EscherichiaColiAbu83972Uid161975,EscherichiaColiApecO1Uid58623,EscherichiaColiAtcc8739Uid58783,EscherichiaColiBl21De3Uid161947,EscherichiaColiBl21De3Uid161949,EscherichiaColiBl21GoldDe3PlyssAgUid59245,EscherichiaColiBw2952Uid59391,EscherichiaColiBRel606Uid58803,EscherichiaColiCft073Uid57915,EscherichiaColiDh1Uid161951,EscherichiaColiDh1Uid162051,EscherichiaColiCloneDI14Uid162049,EscherichiaColiCloneDI2Uid162047,EscherichiaColiE24377aUid58395,EscherichiaColiEd1aUid59379,EscherichiaColiEtecH10407Uid161993,EscherichiaColiHsUid58393,EscherichiaColiIai1Uid59377,EscherichiaColiIai39Uid59381,EscherichiaColiIhe3034Uid162007,EscherichiaColiK12SubstrDh10bUid58979,EscherichiaColiK12SubstrMg1655Uid57779,EscherichiaColiK12SubstrW3110Uid161931,EscherichiaColiKo11flUid162099,EscherichiaColiKo11flUid52593,EscherichiaColiLf82Uid161965,EscherichiaColiNa114Uid162139,EscherichiaColiO103H212009Uid41013,EscherichiaColiO104H42009el2050Uid175905,EscherichiaColiO104H42009el2071Uid176128,EscherichiaColiO104H42011c3493Uid176127,EscherichiaColiO111H11128Uid41023,EscherichiaColiO127H6E234869Uid59343,EscherichiaColiO157H7Ec4115Uid59091,EscherichiaColiO157H7Edl933Uid57831,EscherichiaColiO157H7SakaiUid57781,EscherichiaColiO157H7Tw14359Uid59235,EscherichiaColiO26H1111368Uid41021,EscherichiaColiO55H7Cb9615Uid46655,EscherichiaColiO55H7Rm12579Uid162153,EscherichiaColiO7K1Ce10Uid162115,EscherichiaColiO83H1Nrg857cUid161987,EscherichiaColiP12bUid162061,EscherichiaColiS88Uid62979,EscherichiaColiSe11Uid59425,EscherichiaColiSe15Uid161939,EscherichiaColiSms35Uid58919,ShigellaBoydiiSb227Uid58215,ShigellaBoydiiCdc308394Uid58415,ShigellaDysenteriaeSd197Uid58213,ShigellaFlexneri2002017Uid159233,ShigellaFlexneri2a2457tUid57991,ShigellaFlexneri2a301Uid62907,ShigellaFlexneri58401Uid58583,ShigellaSonneiSs046Uid58217,ShigellaSonnei53gUid84383,EscherichiaColiUm146Uid162043,EscherichiaColiUmn026Uid62981,EscherichiaColiUmnk88Uid161991,EscherichiaColiUti89Uid58541,EscherichiaColiWUid162011,EscherichiaColiWUid162101,EscherichiaColiXuzhou21Uid163995,reference http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenome/hub.txt
EcoliCompHubWtDups ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenomeWithDups/hub.txt DebugEscherichiaColi042Uid161985,EscherichiaColi536Uid58531,EscherichiaColi55989Uid59383,EscherichiaColiAbu83972Uid161975,EscherichiaColiApecO1Uid58623,EscherichiaColiAtcc8739Uid58783,EscherichiaColiBl21De3Uid161947,EscherichiaColiBl21De3Uid161949,EscherichiaColiBl21GoldDe3PlyssAgUid59245,EscherichiaColiBw2952Uid59391,EscherichiaColiBRel606Uid58803,EscherichiaColiCft073Uid57915,EscherichiaColiDh1Uid161951,EscherichiaColiDh1Uid162051,EscherichiaColiCloneDI14Uid162049,EscherichiaColiCloneDI2Uid162047,EscherichiaColiE24377aUid58395,EscherichiaColiEd1aUid59379,EscherichiaColiEtecH10407Uid161993,EscherichiaColiHsUid58393,EscherichiaColiIai1Uid59377,EscherichiaColiIai39Uid59381,EscherichiaColiIhe3034Uid162007,EscherichiaColiK12SubstrDh10bUid58979,EscherichiaColiK12SubstrMg1655Uid57779,EscherichiaColiK12SubstrW3110Uid161931,EscherichiaColiKo11flUid162099,EscherichiaColiKo11flUid52593,EscherichiaColiLf82Uid161965,EscherichiaColiNa114Uid162139,EscherichiaColiO103H212009Uid41013,EscherichiaColiO104H42009el2050Uid175905,EscherichiaColiO104H42009el2071Uid176128,EscherichiaColiO104H42011c3493Uid176127,EscherichiaColiO111H11128Uid41023,EscherichiaColiO127H6E234869Uid59343,EscherichiaColiO157H7Ec4115Uid59091,EscherichiaColiO157H7Edl933Uid57831,EscherichiaColiO157H7SakaiUid57781,EscherichiaColiO157H7Tw14359Uid59235,EscherichiaColiO26H1111368Uid41021,EscherichiaColiO55H7Cb9615Uid46655,EscherichiaColiO55H7Rm12579Uid162153,EscherichiaColiO7K1Ce10Uid162115,EscherichiaColiO83H1Nrg857cUid161987,EscherichiaColiP12bUid162061,EscherichiaColiS88Uid62979,EscherichiaColiSe11Uid59425,EscherichiaColiSe15Uid161939,EscherichiaColiSms35Uid58919,ShigellaBoydiiSb227Uid58215,ShigellaBoydiiCdc308394Uid58415,ShigellaDysenteriaeSd197Uid58213,ShigellaFlexneri2002017Uid159233,ShigellaFlexneri2a2457tUid57991,ShigellaFlexneri2a301Uid62907,ShigellaFlexneri58401Uid58583,ShigellaSonneiSs046Uid58217,ShigellaSonnei53gUid84383,EscherichiaColiUm146Uid162043,EscherichiaColiUmn026Uid62981,EscherichiaColiUmnk88Uid161991,EscherichiaColiUti89Uid58541,EscherichiaColiWUid162011,EscherichiaColiWUid162101,EscherichiaColiXuzhou21Uid163995,reference http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenomeWithDups/hub.txt
Croc and Bird Hub ERROR: Couldn't open http://genome-test.soe.ucsc.edu/~jcarmstr/crocBrowserRC2/hub.txt DebugallMis2,Anc00,Anc01,Anc02,Anc03,Anc04,Anc06,Anc07,Anc08,Anc09,Anc10,Anc11,Anc12,Anc13,Anc14,Anc15,Anc16,Anc17,Anc18,Anc19,Anc20,Anc21,Anc05,melUnd1,galGal4,ficAlb2,croPor2,ghaGan1,cheMyd1,anoCar2,anaPla1,geoFor1,strCam0,chrPic1,amaVit1,falPer1,colLiv1,falChe1,araMac1,pelSin1,apaSpi1,pseHum1,melGal1,zonAlb1,taeGut2 http://genome-test.soe.ucsc.edu/~jcarmstr/crocBrowserRC2/hub.txt
Cancer Genomics Tracks ERROR: Couldn't make directory /usr/local/apache/trash/udcCache/http/genome-test.soe.ucsc.edu Debughg19 http://genome-test.soe.ucsc.edu/~max/immuno/track/hub/hub.txt
GTEx RNA-seq Signal Hub RNA-seq read coverage in 53 tissues from GTEx V6 (7572 samples) hg19,hg38 http://hgdownload.soe.ucsc.edu/hubs/gtex/hub.txt
GTEx Analysis Hub ERROR: Couldn't make directory /usr/local/apache/trash/udcCache/http/hgdownload.soe.ucsc.edu/hubs Debughg19,hg38 http://hgdownload.soe.ucsc.edu/hubs/gtexAnalysis/hub.txt
WormBase WormBase nematode genomes brenneri,japonica,remanei,ovolvulus,briggsae,brugia,brugia3,elegans,s_ratti http://hubs.yllb.de/pub/databases/wormbase/releases/current-production-release/MULTI_SPECIES/hub/hub.txt
Cancer genome polyA site & usage ERROR: getaddrinfo() error on hostName=johnlab.org: Name or service not known Couldn't open http://johnlab.org/xpad/Hub/UCSC.txt Debughg19 http://johnlab.org/xpad/Hub/UCSC.txt
UCD Methylation ERROR: TCP non-blocking connect() to lasallelab.genomecenter.ucdavis.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt Debughg19,hg18,mm10,mm9,bosTau7,bosTau6,canFam3,equCab2,monDom5,rheMac2,rheMac3 http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt
DASHR small ncRNA ERROR: Couldn't open http://lisanwanglab.org/DASHR/tracks/hub.txt Debughg19 http://lisanwanglab.org/DASHR/tracks/hub.txt
Ensembl Regulatory Build ERROR: Couldn't open http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt Debughg38,hg19,mm10 http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt
GRC Genome Issues under Review Genome Reference Consortium: Genome issues and other features hg38,hg19,mm10,mm9,danRer7,danRer10 http://ngs.sanger.ac.uk/production/grit/track_hub/hub.txt
CPTAC Hub v1 Clinical Proteomic Tumor Analysis Consortium (CPTAC) Hub v1 hg19 http://openslice.fenyolab.org/tracks/CPTAC/cptac/v1/hub.txt
lncRNA in Breast Cancer ERROR: TCP non-blocking connect() to pecan.swmed.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://pecan.swmed.edu/public/breast_cancer_lncrna_pmid_26236012/hub.txt Debughg19 http://pecan.swmed.edu/public/breast_cancer_lncrna_pmid_26236012/hub.txt
Vista Enhancers ERROR: Couldn't open http://portal.nersc.gov/dna/RD/ChIP-Seq/VISTA_enhancer_e/VistaEnhancerTrackHub/hub.txt Debughg19,mm9,mm10 http://portal.nersc.gov/dna/RD/ChIP-Seq/VISTA_enhancer_e/VistaEnhancerTrackHub/hub.txt
Peterhof_yeasts Assemblies, SNV and CNV data for Saccharomyces cerevisiae strains of the Peterhof Genetic Collection sacCer3,1B_D1606_spades,1B_D1606_chromosomer,15V_P4_spades,15V_P4_chromosomer,25_25_2V_P3982_spades,25_25_2V_P3982_chromosomer,74_D964_spades,74_chromosomer,15V_P4_test,6P_33G_D373_spades,6P_33G_D373_chromosomer http://public.dobzhanskycenter.ru/PeterhofYeastHub/hub.txt
Porcine DNA methylation ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Chankyu/hub.txt DebugsusScr3 http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Chankyu/hub.txt
Hippocampal DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Cognition/hub.txt DebugsusScr3 http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Cognition/hub.txt
Porcine DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/TJ_Tabasco/hub.txt DebugsusScr3 http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/TJ_Tabasco/hub.txt
ZebrafishGenomics ERROR: getaddrinfo() error on hostName=research.nhgri.nih.gov: Temporary failure in name resolution Couldn't open http://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/downloads/NHGRI-1/hub.txt DebugdanRer7,danRer10 http://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/downloads/NHGRI-1/hub.txt
ChromosomeAssembliesGR Comparative data and New chromosome assemblies for Falcon and Pigeon from Damas et al., 2016 Genome Research colLiv2,galGal4,falPer2 http://sftp.rvc.ac.uk/rvcpaper/birdsHUB/hub.txt
DNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data hg38,hg19,hg18,mm9,mm10,panTro2,danRer7,canFam3,rn5,rheMac3,tair10 http://smithlab.usc.edu/trackdata/methylation/hub.txt
FaceBase Hub Comprehensive craniofacial research data from FaceBase.org mm9,hg18,hg19,mm10 http://trackhub.facebase.org/hub.txt
Promoterome CAGE and nucleosome positioning Zebrafish promoterome based on Haberle et al. and Nepal et al. danRer7 http://trackhub.genereg.net/promoterome/hub.txt
Roadmap Epigenomics Integrative Analysis Hub ERROR: Couldn't open http://vizhub.wustl.edu/VizHub/RoadmapIntegrative.txt Debughg19 http://vizhub.wustl.edu/VizHub/RoadmapIntegrative.txt
Roadmap Epigenomics Data Complete Collection at Wash U VizHub ERROR: Couldn't open http://vizhub.wustl.edu/VizHub/RoadmapReleaseAll.txt Debughg19 http://vizhub.wustl.edu/VizHub/RoadmapReleaseAll.txt
C_elegans_isolates ERROR: Couldn't open http://waterston.gs.washington.edu/trackhubs/isolates/hub.txt DebugCB4856Princeton_JR-contig,CB4856Princeton_cycle20,CB4856Princeton_Contigs http://waterston.gs.washington.edu/trackhubs/isolates/hub.txt
454 K562andHelaS3RNAseq ERROR: Couldn't open http://web.stanford.edu/~htilgner/2012_454paper/data/hub.txt Debughg19 http://web.stanford.edu/~htilgner/2012_454paper/data/hub.txt
CEMT (CEEHRC) ERROR: Couldn't open http://www.bcgsc.ca/downloads/edcc/data/CEMT/hub/bcgsc_datahub.txt Debughg19 http://www.bcgsc.ca/downloads/edcc/data/CEMT/hub/bcgsc_datahub.txt
Human Islet lncRNAs ERROR: TCP non-blocking connect() to www.imperial.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://www.imperial.ac.uk/medicine/beta-cell-genome-regulation-laboratory/data/HILNCs/HILNCs.txt Debughg19 http://www.imperial.ac.uk/medicine/beta-cell-genome-regulation-laboratory/data/HILNCs/HILNCs.txt
miRcode microRNA sites Predicted microRNA target sites in GENCODE transcripts hg19 http://www.mircode.org/ucscHub/hub.txt
mm9.SMC1.ChIAPET Cohesin(Smc1)-associated chromatin interactions in murine embryonic stem cells mm9 http://younglab.wi.mit.edu/mESC_ChIAPET_hub/hub.txt
UMassMed ZHub ERROR: getaddrinfo() error on hostName=zlab-trackhub.umassmed.edu: Temporary failure in name resolution Couldn't open http://zlab-trackhub.umassmed.edu/shulhah/hub.txt Debughg19 http://zlab-trackhub.umassmed.edu/shulhah/hub.txt
ChIP-seq data track HUBs from MSC cells from GSE79815 ERROR: Couldn't open https://biochem.wisc.edu/sites/default/files/labs/pike/genome-ucsc/GSE79815_MSC_HUB/hub.txt Debugmm9 https://biochem.wisc.edu/sites/default/files/labs/pike/genome-ucsc/GSE79815_MSC_HUB/hub.txt
Cotney Lab Human Craniofacial Epigenomics Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health hg19,mm9 https://cotneylab.cam.uchc.edu/~jcotney/CRANIOFACIAL_HUB/Craniofacial_Data_Hub.txt
PhyloCSF Evolutionary protein-coding potential as measured by PhyloCSF hg19,hg38,mm10,galGal4,dm6 https://data.broadinstitute.org/compbio1/PhyloCSFtracks/trackHub/hub.txt
GeneHancer enhancers GeneHancer: genome-wide integration of enhancers and target genes in GeneCards hg38 https://genecards.weizmann.ac.il/geneloc/gh_hub/hub.txt
Umap and Bismap mappability Uniquely mappable regions of genome and methylome hg38,hg19,mm9,mm10 https://pmgenomics.ca/hoffmanlab/proj/bismap/trackhub/hub.txt
LIBD Human DLPFC Development ERROR: Couldn't open https://s3.amazonaws.com/DLPFC_n36/humanDLPFC/hub.txt Debughg19 https://s3.amazonaws.com/DLPFC_n36/humanDLPFC/hub.txt
No Unlisted Track Hubs
Contact genome@soe.ucsc.edu to add a public hub.