Most proteins are composed of one or more conserved functional regions called
domains. This track shows the high-quality, manually-curated
domains found in transcripts located in the UCSC Genes track.
Display Conventions and Configuration
This track follows the display conventions for
The sequences from the knownGenePep table (see
UCSC Genes description page)
are submitted to the set of Pfam-A HMMs which annotate regions within the
predicted peptide that are recognizable as Pfam protein domains. These regions
are then mapped to the transcripts themselves using the
pslMap was written by Mark Diekhans at UCSC.
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G,
Forslund K et al.
The Pfam protein families database.
Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22.
PMID: 19920124; PMC: PMC2808889