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Revised: Jun 28, 2007.
NONCODE PFClass


The The process function class (pfclass) of an ncRNA is based on the cellular process in which it takes part in(e.g DNA duplication, RNA replication, protein translation etc). In addition, a second term and third term specifying a sub-process or the specific function of the ncRNA, may be added to the term describing the main process. For example, the snRNA U1 will be assigned to the pfclass RNA_processing_splicing, and Rnase P RNAs to the pfclass RNA_processing_cleavage. Each ncRNA is assigned to one or more of 26 pfclasses. Here we itemize all pfclass:

DNA_imprinting
DNA_packaging
DNA_repair
DNA_replication_initiation
DNA_replication_regulation
DNA_replication_repression
DNA_stability
DNA_transcription_initiation
DNA_transcription_regulation
DNA_transcription_regulation of RNA Polymerase
DNA_transcription_repression
RNA_editing
RNA_modification_methylation
RNA_modification_methylation&pseudouridylation
RNA_modification_pseudouridylation
RNA_processing_cleavage
RNA_processing_splicing
RNA_reverse_transcription
RNA_translation_enhancement
RNA_translation_regulation
RNA_translation_suppression
RNA_translation_surveillance
RNA_translocation
Protein_transport
Miscfunction_mRNAlike
Miscfunction_snm


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