An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG001955.2

General info


NONCODE GENE IDNONHSAG001955.2
Chromosomechr1
Start Site84596235
End Site84621031
Strand-
Length2145
Assemblyhg38
ClassLinc;
Other Gene VersionsNONHSAG001955.3

Transcripts in Gene


NONCODE TRANSCRIPT ID
NONHSAT151842.1
NONHSAT151843.1
NONHSAT151844.1

Expression Profile (Data Source:Human Body Map)

adiposeadrenalbrainbrain_Rbreastcolonforeskinheart
heart_RHLF_1HLF_2kidneyliverliver_RlunglymphNode
ovaryplacenta_RprostateskeltalMuscletestestestes_RthyroidwhiteBloodCell
NA

Exosome Expression Profile (Data Source: NCBI GEO)

NA

Conservation Info


  • Chordata
    • Vertebrates
      • Manmals
        • Primates
          • Human
          • Chimp : N/A
          • Gorilla : N/A
          • Orangutan : N/A
          • Rhesus : N/A
        • Rodents
          • Mouse : N/A
          • Rat : N/A
        • Laurasiatheria
          • Pig : N/A
          • Cow : N/A
        • Opossum : N/A
        • Platypus : N/A
      • Birds
        • Chicken : N/A
    • Actinopteryqii
      • Zebrafish : N/A

Note: T = There are transcripts in this region.


Disease related

Disease:

NONCODE IDGene SymbolDisease nameSource DatabaseSource PMID

Mutations:

NONCODE IDSNP IDGWAS traitSource PMID
NONHSAG001955.3rs2945143Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs2945143Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs2945143Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2945143Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs2945143Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2945145Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs2945145Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs2945145Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2945145Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs2945145Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2945145Gene expression of SPATA1 in normal prepouch ileum23474282
NONHSAG001955.3rs2945147Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs2945147Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs2945147Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2945147Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs2945147Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2945147Gene expression of CTBS in peripheral blood monocytes20502693
NONHSAG001955.3rs2945147Gene expression of GNG5 in peripheral blood monocytes20502693
NONHSAG001955.3rs2945147Serum concentration of 3-methylxanthine21886157
NONHSAG001955.3rs17375358Gene expression of CTBS///SPATA1 in blood21829388
NONHSAG001955.3rs17375358Autism with verbal ability20663923
NONHSAG001955.3rs2911597Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs2911597Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs2911597Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2911597Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs2911597Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2911597Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases22685416
NONHSAG001955.3rs2911597Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in non-Alzheimer's disease samples22685416
NONHSAG001955.3rs2911597Gene expression of GNG5///SPATA1 in blood21829388
NONHSAG001955.3rs2911597Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases22685416
NONHSAG001955.3rs2911597Gene expression of SPATA1 in normal prepouch ileum23474282
NONHSAG001955.3rs2911597Serum ratio of (1-stearoylglycerophosphocholine)/(2-stearoylglycerophosphocholine*)21886157
NONHSAG001955.3rs2911597Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Progressive Supranuclear Palsy cases22685416
NONHSAG001955.3rs12145771Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs12145771Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs12145771Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs12145771Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs12145771Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs12119873Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs12119873Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs12119873Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs12119873Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs12119873Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2911598Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs2911598Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs2911598Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2911598Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs2911598Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2911599Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs2911599Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs2911599Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2911599Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs2911599Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2911602Serum concentration of 3-methylxanthine21886157
NONHSAG001955.3rs2911603Gene expression of CTBS in peripheral blood monocytes20502693
NONHSAG001955.3rs2911603Gene expression of GNG5 in peripheral blood monocytes20502693
NONHSAG001955.3rs2911603Serum ratio of (1-stearoylglycerophosphoethanolamine)/(2-linoleoylglycerophosphoethanolamine*)21886157
NONHSAG001955.3rs2911603Gene expression of ATP6V1E2 in peripheral blood monocytes20502693
NONHSAG001955.3rs12127160Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs12127160Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs12127160Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs12127160Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs12127160Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2007454Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs2007454Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs2007454Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs2007454Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2007454Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Cerebellum20485568
NONHSAG001955.3rs2007454Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs1417295Gene expression of CTBS in peripheral blood monocytes20502693
NONHSAG001955.3rs1417295Gene expression of GNG5 in peripheral blood monocytes20502693
NONHSAG001955.3rs1417295Serum concentration of 3-methylxanthine21886157
NONHSAG001955.3rs2994435Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs2994435Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs2994435Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs880412Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Frontal cortex20485568
NONHSAG001955.3rs880412Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Temporal cortex20485568
NONHSAG001955.3rs880412Gene expression of SPATA1 (probeID ILMN_1685680) in cerebellum in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs880412Methylation levels at chr1:84812240-84812290 [hg18 coord, probe cg08380539] in Caudal pons20485568
NONHSAG001955.3rs880412Gene expression of SPATA1 (probeID ILMN_1685680) in temporal cortex in Alzheimer's disease cases and controls22685416
NONHSAG001955.3rs2994434Gene expression of CTBS in peripheral blood monocytes20502693
NONHSAG001955.3rs2994434Gene expression of CTBS (ENSG00000117151) in dendritic cells treated with Mycobacterium tuberculosis22233810
NONHSAG001955.3rs2994434Serum ratio of (3-carboxy-4-methyl-5-propyl-2-furanpropanoate (CMPF))/(glycocholate)21886157

Potential Function


NA