An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG019540.1

General info


NONCODE GENE IDNONHSAG019540.1
Chromosomechr16
Start Site56682469
End Site56688052
Strand+
Length1199
Assemblyhg38
ClassLinc;
Other Gene VersionsNONHSAG019540.1(old version)

Transcripts in Gene


NONCODE TRANSCRIPT ID

Expression Profile (Data Source:Human Body Map)

adiposeadrenalbrainbrain_Rbreastcolonforeskinheart
heart_RHLF_1HLF_2kidneyliverliver_RlunglymphNode
ovaryplacenta_RprostateskeltalMuscletestestestes_RthyroidwhiteBloodCell
NA

Exosome Expression Profile (Data Source: NCBI GEO)

NA

Conservation Info


  • Chordata
    • Vertebrates
      • Manmals
        • Primates
          • Human
          • Chimp : N/A
          • Gorilla : N/A
          • Orangutan : N/A
          • Rhesus : N/A
        • Rodents
          • Mouse : N/A
          • Rat : N/A
        • Laurasiatheria
          • Pig : N/A
          • Cow : N/A
        • Opossum : N/A
        • Platypus : N/A
      • Birds
        • Chicken : N/A
    • Actinopteryqii
      • Zebrafish : N/A

Note: T = There are transcripts in this region.


Disease related

Disease:

NONCODE IDGene SymbolDisease nameSource DatabaseSource PMID

Mutations:

NONCODE IDSNP IDGWAS traitSource PMID
NONHSAG019540.2rs2301234Methylation levels at chr16:55273633-55273683 [hg18 coord, probe cg26802333] in Temporal cortex20485568
NONHSAG019540.2rs2301234Methylation levels at chr16:55273633-55273683 [hg18 coord, probe cg26802333] in Frontal cortex20485568
NONHSAG019540.2rs2301234Methylation levels at chr16:55273633-55273683 [hg18 coord, probe cg26802333] in Caudal pons20485568
NONHSAG019540.2rs4783952Gene expression of MT1X in blood21829388
NONHSAG019540.2rs4783952Gene expression of MT1F in blood21829388
NONHSAG019540.2rs4783952Gene expression of MT1F in CD4+ lymphocytes20833654
NONHSAG019540.2rs4783952Gene expression of MT1X in blood cells in Celiac disease19128478
NONHSAG019540.2rs4783952Gene expression of MT1F (ENSG00000198417) in dendritic cells22233810
NONHSAG019540.2rs4783952Gene expression of MT1X in CD4+ lymphocytes20833654
NONHSAG019540.2rs4783952Gene expression of MT1A (ENSG00000205362) in dendritic cells22233810
NONHSAG019540.2rs11076164Gene expression of MT1X in blood21829388
NONHSAG019540.2rs11076164Gene expression of MT1F in blood21829388
NONHSAG019540.2rs11076164Gene expression of MT1F in CD4+ lymphocytes20833654
NONHSAG019540.2rs11076164Gene expression of MT1X [probe ILMN_16629] in osteoblasts treated with PGE221283786
NONHSAG019540.2rs11076164Gene expression of BBS2 in blood21829388
NONHSAG019540.2rs11076164Gene expression of MT1X in CD4+ lymphocytes20833654
NONHSAG019540.2rs11076164Gene expression of MT1F in blood cells in Celiac disease19128478
NONHSAG019540.2rs11076164Gene expression of MT1DP in blood21829388
NONHSAG019540.2rs12598600Gene expression of MT1X in blood21829388
NONHSAG019540.2rs12598600Body mass index (BMI)17463246
NONHSAG019540.2rs12598600Type 2 diabetes17463246

Potential Function


NA