An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG028882.3

General info


NONCODE GENE IDNONHSAG028882.3
Chromosomechr2
Start Site108468245
End Site108534201
Strand-
Length28634
Assemblyhg38
ClassLinc;
Other Gene VersionsNONHSAG028882.2(old version)

Transcripts in Gene


NONCODE TRANSCRIPT ID
NONHSAT185316.1
NONHSAT185318.1
NONHSAT242399.1
NONHSAT242400.1
NONHSAT242401.1
NONHSAT242402.1
NONHSAT242403.1
NONHSAT242404.1
NONHSAT073105.2

Expression Profile (Data Source:Human Body Map)

adiposeadrenalbrainbrain_Rbreastcolonforeskinheart
0.4557461.322420.6638090.2601970.627560.614140.2485760.106384
heart_RHLF_1HLF_2kidneyliverliver_RlunglymphNode
0.1894830.4314210.4138760.7782770.9444950.1325860.2020540.733684
ovaryplacenta_RprostateskeltalMuscletestestestes_RthyroidwhiteBloodCell
1.093560.2939750.4352760.0991870.986890.358770.4538610.184583
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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine
(Squamous Cell Carcinoma Cell Line Exosomes)
BJ_cellLine
(Foreskin Fibroblast Cell Line Exosomes)
HepG2_cellLine
(Hepatocellular Carcinoma Cell Line Exosomes)
HUVEC_cellLine
(Human Umbilical Vein Endothelial Cell Line Exosomes)
invasive_NFPAs
(Invasive Non-functional Pituitary Adenomas Exosomes)
0.464524.718513.063862.909173.02628
non-invasive_NFPAs
(Non-invasive Non-functional Pituitary Adenomas Exosomes)
MCF7_cellLine
(Human Breast Cancer Cell Line Exosomes)
MDA-MB-231_cellLine
(Human Breast Cancer Cell Line Exosomes)
tuberculosis_patients_serum
(Active Tuberculosis Patients Serum Exosomes)
normal_people_blood
(Normal People Blood Exosomes)
2.98759004.021543.44273
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Conservation Info


  • Chordata
    • Vertebrates
      • Manmals
        • Primates
          • Human
          • Chimp : N/A
          • Gorilla : N/A
          • Orangutan : N/A
          • Rhesus : N/A
        • Rodents
          • Mouse : N/A
          • Rat : N/A
        • Laurasiatheria
          • Pig : N/A
          • Cow : N/A
        • Opossum : N/A
        • Platypus : N/A
      • Birds
        • Chicken : N/A
    • Actinopteryqii
      • Zebrafish : N/A

Note: T = There are transcripts in this region.


Disease related

Disease:

NONCODE IDGene SymbolDisease nameSource DatabaseSource PMID

Mutations:

NONCODE IDSNP IDGWAS traitSource PMID
NONHSAG028882.3rs2718707LDL cholesterol20686565
NONHSAG028882.3rs2718707Total cholesterol20686565
NONHSAG028882.3rs10179602Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs1898557Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Cerebellum20485568
NONHSAG028882.3rs1898557Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Frontal cortex20485568
NONHSAG028882.3rs1898557Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2243888Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Cerebellum20485568
NONHSAG028882.3rs2243888Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Frontal cortex20485568
NONHSAG028882.3rs2243888Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2718705LDL cholesterol20686565
NONHSAG028882.3rs2577621LDL cholesterol20686565
NONHSAG028882.3rs2577620LDL cholesterol20686565
NONHSAG028882.3rs2577620Smoking cessation24665060
NONHSAG028882.3rs2577620Total cholesterol20686565
NONHSAG028882.3rs2577619Total cholesterol20686565
NONHSAG028882.3rs6719131Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs1053027Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2577618LDL cholesterol20686565
NONHSAG028882.3rs2577618Total cholesterol20686565
NONHSAG028882.3rs1025695Gene expression of GCC2 in peripheral blood monocytes20502693
NONHSAG028882.3rs2718700LDL cholesterol20686565
NONHSAG028882.3rs2718700Total cholesterol20686565
NONHSAG028882.3rs2577615LDL cholesterol20686565
NONHSAG028882.3rs2577615Total cholesterol20686565
NONHSAG028882.3rs2577613Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Cerebellum20485568
NONHSAG028882.3rs2577613Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Frontal cortex20485568
NONHSAG028882.3rs2577613Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2577613Gene expression of GCC2 in blood21829388
NONHSAG028882.3rs2577594Gene expression of GCC2 in peripheral blood monocytes20502693
NONHSAG028882.3rs2577594Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Caudal pons20485568
NONHSAG028882.3rs2577594Multiple complex diseases17554300
NONHSAG028882.3rs2577594Crohn's disease, gender differentiated17554300
NONHSAG028882.3rs12104502Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2577599Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Cerebellum20485568
NONHSAG028882.3rs2577599Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Frontal cortex20485568
NONHSAG028882.3rs2577599Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2577599Gene expression of GCC2 in blood21829388
NONHSAG028882.3rs6710336Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs6710336Serum ratio of (5-dodecenoate (12:1n7))/(palmitoleate (16:1n7))21886157
NONHSAG028882.3rs2378150Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2577597LDL cholesterol20686565
NONHSAG028882.3rs2577597Total cholesterol20686565
NONHSAG028882.3rs11123698Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2577596LDL cholesterol20686565
NONHSAG028882.3rs2577596Total cholesterol20686565
NONHSAG028882.3rs12779LDL cholesterol20686565
NONHSAG028882.3rs12779Total cholesterol20686565
NONHSAG028882.3rs2077472Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2438238Gene expression of GCC2 in peripheral blood monocytes20502693
NONHSAG028882.3rs2438238Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Cerebellum20485568
NONHSAG028882.3rs2438238Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Frontal cortex20485568
NONHSAG028882.3rs2438238Methylation levels at chr2:108431746-108431796 [hg18 coord, probe cg12433691] in Temporal cortex20485568
NONHSAG028882.3rs2118450Gene expression of GCC2 in peripheral blood monocytes20502693
NONHSAG028882.3rs11123706Autism20663923

Potential Function


NA