NONCODE TRANSCRIPT ID NONHSAT105936.1 NONCODE Gene ID NONHSAG042499.2 Chromosome chr5 Start Site 181245875 End Site 181252438 Strand - Exon Number 6 CNCI Score -0.0294912 Length 3420 Assembly hg38 Other transcript Versions NONHSAT105936.1 (old version)
Sequence
>NONHSAT105936.1 actactagctacatatgacttgagctcttgaaatgtggctagtgcacctcatgaactcaatttttaagatagtatttaatttaattttaattagccacatgtagctagtggctatcaaatcctatttaacagcacagTTCTGTACAACCAAAGTCTAGTTCTTCCTGGGGCCCTTGGGAGTAGCAAGTCCAAGGGGGAGGATAAAAACAGAAATGAAACAATTTTCTTTTTCCAGCTGGGAGCGGTAGGCTGTAAGGTAATATTTTTAGACATAAAAGGAGAAAATATTTTATTTTTAAAATCTGACCAAAATGATCTTGAGCCACCTATCACTTCTGATACACGTGGATCACACGGGTGACGAGACAGGAGAAAACTAGGGGAAACAAGTTAGAAAATAAACTGTATTACCTTCTCCTATCAAAAAAGGTCTGGGGCTAGAGCTGGAGCCTCAAAATAGGAGGGATAATAAATATAGGGTTTTACTTTGTGCCTGACTTTTTGAAAATGGGATGGGGGGCAAAACCTAGTATTGAAGCAGGTAAGTGGGTTCTTTCCGTGTTACAGCAGATGAGGGTGATGAGGAGCTCTTGGAGTCCTGGAAGAGAGAGCAGCCTGTGCTGACAGAGTTAATGAGAGGACAGATCTAGGAGTAACAGGGTCTGAGGAGAGGAGATGGCCTCCCAGACCATGAGAACTAACAGTTGTGATAAATTTAATCATAGTCTGTCCAAACCAGAGAGTCCTCAAGTGTGGTATGAGAATCCTGGGTGTGGGGCAGTGAGCTCATTTCTGCTCTTGAGAAGTGTAGGAGATGCAGCAAGGTTCCTGCTATCAGGAGACCTGCAAAGATGGAAGGAAACGTTCCTCTAAGTTATTACTTGTCTCACCTCCTCCCTCCCCCAAAGGAAGGGGAAAGATAGACACCTCGGGGATTTGAATTAGAAATAGCCCTTTGGAGGgttttCTTTAAGAACAAGGAGGCTTATCCTCTATAGCGATTCCCCCTGCTGAGGTTTGTGCTTAGGCCTTCCTAGCTTTCTCGTCTCATCttttttctttttttttttgagttttgcccttgtcgcccaggctctggagtgcagtgacacgacctcggctcactgcaacctccacctcccaggttcaagcagttctcctgcctcagcctccagggtagctgggattacaagcatgtgctaccacgcccagctaatttttttatatttaaaaaaattaaaatgtaattttaattgttggccaggctggtctcgaactcctgacctcaggtgatctgtccacctcggcctcccaaagtgctgggattataggcaggagccaccacgcccagccATCTCCCCTCATCTTAAGGGACCGAGATCCCAACTTAGAGCCCTTTGGTTGACAATTCCAGCTGGCAGTAAGCAGAGTCCTACAAAGATAAGGAGGGATCCAGGTGGCCTGGAGAGGATCCATGGAGCTCACATCCCCATGCTACTTTAAATCCTTTGACAAGGAGGCTAGAAGCTTGACTTCTCCCTGCAtttctttttttttttctttttttgagatgcagtctccctctgttgcccaggctggagtgcggtgacgcaatctcggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaagcatgcaccaccacgcccagctaatttttgtatttttaggagagacagggttttgccatgctggtcaggctggtcttgaactcctgacctcaagtgacccacctgccttggcctcccaaagtgctggaattacaggcatgaaccaccgcgcccggccATCCCTGCATTTATTATAGTCCTGTCTGGACCATCCCCTTTCCACAGCCTCTGACTCTGTATCTGCCAAAGCACCCAGGCCTAGCCCACAGTCCATCTCCCAAGGAAGCCCCGGCCAAAGCCTCCACTGGGTGGTGAGAATGCAACACTTAGCAGAAACAGAGCAGTCCTTGTGAGGAGACACCTGAGGGATAAGAAGAACCAGTATACACTACACCACCgctgtgaaagcatgaaacaaatgtgacctagacctgagggtcccagaggcttccctgaacaggcaacctaagctgagaccccaagaaagcttagattgaaccgagagggttggggagggatgtgatgggccttccaggcagaacaatgtgtgttctgtgtgggagagaactaatgagtttggaggaagagcggaggcccagtctggcCACAAACACAAGAGTATGGGACACGCCAGAGGAAGCCACACGGATTTTGCAGGGAGACAGTAAGGATTTTGCTCATCATCTTAAAGTACGTAAAGTACGTGGGAAAGCCTCCTGCACAGAGTTTTAGCTGGCAGTCAGCAGGCCCTCTGGTCCTGGCCACGCACCTTTCCCTCAGCCTCGCCTCAGCATTCAAGGGAAAACCTGCCACCGCGCAAGCCCTCCAGGGTCTGGAATGCTGGCAGGAGGGGATGGATGCCTCTGCTCCTGGAGAAAAGGGCTCTGGCAGGGAAGCCTGAGGGGCTGGTTCCAACTGTACAGGTCCTGTGGACTCCTCAGAAAAGGAATGGTGAGATGGATTTTCATAGGAGAGCCTCTCCAATTTCTCCTTGGGACgacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccTCTCCTTGGGACTCTTACCTTGTATGGAATGGAAGTGGTGCCTCTGGGGTCCCAGACACGGGAGAGAGGAAGCAGCCCAGGGGCTGGGAGAAGTGGTGAGACCCAGAAGAACGGTGGACCCAGTCAGGAAGGGTCCTGCCAGCAGGGCGTGGGCCAGCCTCGGGGTCTTCCCCAAAAGGCAGGTAGGGGCCTCCAGCAAGCTTCCCACCTCCGTGAGGCTGGAGAAGAGGCCCCCTGGATGAGAAGGAAGAGGCCGGCAGGTCCGGCGGGCGCAGGCACAGGGTCCTCAACCCGGGAACCCCTCGCACCGCGAATCTCAGTCCACAGCGGGAGGCGGGTGTGGTCGTTCACCTATTTGTGCCCGAGGGCTCAGGGAGGCGCTGGCATGACCCGAGTGGGGGGCAGCAAGCTGGTTAGCGGGAGGGTGAAGGCAGCGGTCTTCCACGACCACCACAATCACCTGGGTAGGGATTGAGTCCCGTATTGGAAAAGCGAAAGAACAGTCAGCTGGGGGTGCCAAGGAGGCAGGTGATGTATACAAACCTGGAGCCTTAGGATGGTCCACAGGCTGCGGAGGACCACAGCCAGGACAACGTCCCGGAAAGCCCAAGGGAGACTGCGGCGGAAGGCAGGGGAACC
Expression Profile(Data Source:Human Body Map ) Exosome Expression Profile(Data Source: NCBI GEO ) Structure Visualization No structure predicted!
DataSource: show detail information
See experimental data visualization in DMS dataset or PARS dataset
The following is the detail information of RNA secondary structure predicttion.
We use software RME We select two datasets respectively from PARS and DMS-seq to predict. However, it only predicted minority RNA secondary structures through dataset correction with the limitation of sequencing data coverage. So many transcripts only have RNA secondary structure information predicted without experimental data. If the transcript do have sequencing data covered, you can switch "DataSource" to see the RNA secondary structure predicted based on different datasets.
We use forna If you want more detail infomation of RNA secondary structure of this transcript, please visit website http://RNAex.ncrnalab.org/
Data Sources
