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| organism | ncid | uniqid | accession | class | pfclass | name |
| Plasmid ColIb-P9 | n25 | u25 | AB021078 | ReplicationControl RNA | DNA_transcription_regulation | inc |
| Yersinia pestis biovar Medievalis str. 91001 | n587 | u557 | AE017043 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
| Yersinia pestis KIM | n770 | u727 | AF074612 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
| Homo sapiens (human) | n792 | u748 | AF092038 | SRA RNA | DNA_transcription_regulation | SRA RNA |
| Mus musculus (house mouse) | n793 | u749 | AF092039 | SRA RNA | DNA_transcription_regulation | SRA RNA |
| Shigella flexneri | n1434 | u1354 | AF348706 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
| Klebsiella pneumoniae | n2143 | u1987 | AJ009980 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
| Enterobacter intermedius | n2144 | u1988 | AJ009981 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
| Yersinia pestis | n3782 | u3369 | AL117189 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
| Plasmid F | n3825 | u3405 | AP001918 | ReplicationControl RNA | DNA_transcription_regulation | inc |
| Escherichia coli | n4610 | u4057 | M16167 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
| Plasmid ColIb-P9 | n4706 | u4135 | M34837 | ReplicationControl RNA | DNA_transcription_regulation | inc RNA |
| Escherichia coli | n5317 | u4678 | V00319 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
| Escherichia coli | n5318 | u4678 | V00326 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
| Escherichia coli | n5355 | u4678 | X02302 | ReplicationControl RNA | DNA_transcription_regulation | copA RNA |
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